Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs10786361 chr10:99408768 G/C 5.82E-6 489 31.32 29.15 24.67 KM Plot
PRAD rs1079576 chr22:18446318 C/A 3.96E-6 493 30.8 31.87 26.58 KM Plot
PRAD rs10798841 chr1:31755501 G/A 2.37E-6 489 22.83 31.28 31.38 KM Plot
PRAD rs10837570 chr11:1632168 C/G 0.000116 494 18.55 31 31.23 KM Plot
PRAD rs10837692 chr11:1637544 T/C 3.9E-6 473 16.53 29.4 31.27 KM Plot
PRAD rs10874766 chr1:93743842 G/C 0.00016 493 31.3 28.13 28.77 KM Plot
PRAD rs10881776 chr10:82331629 C/T 1.6E-6 480 31.3 28.07 20.18 KM Plot
PRAD rs10882973 chr10:99403576 A/G 5.76E-6 492 31.27 29.13 24.67 KM Plot
PRAD rs10882976 chr10:99417981 T/C 4.9E-9 484 31.37 29.4 24.67 KM Plot
PRAD rs10882977 chr10:99421044 G/A 4.87E-9 485 31.37 29.28 24.67 KM Plot
PRAD rs10887636 chr10:88410251 C/T 1.04E-6 487 30.78 32.75 20.93 KM Plot
PRAD rs10896004 chr11:65226479 G/A 5.18E-5 485 32.13 30.53 18.6 KM Plot
PRAD rs10898870 chr11:72456218 A/C 7.81E-5 470 30.33 35.33 23.25 KM Plot
PRAD rs10907175 chr1:1130727 A/C 1.16E-5 494 31.27 28.78 24.75 KM Plot
PRAD rs10907176 chr1:1130855 T/C 1.31E-5 489 31.27 29.05 24.75 KM Plot